PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_8211_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 489aa    MW: 50853.2 Da    PI: 9.427
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_8211_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.4e-056183123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C++C+k F r  nL+ H r H
  Neem_8211_f_2 61 FVCEICNKGFQRDQNLQLHRRGH 83
                   89*******************88 PP

2zf-C2H217.21.4e-05137159123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ykC+ C+k +  +s+ k H++t+
  Neem_8211_f_2 137 YKCERCSKKYAVQSDWKAHMKTC 159
                    9********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.38E-86083No hitNo description
Gene3DG3DSA:3.30.160.601.6E-56083IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9496183IPR007087Zinc finger, C2H2
PfamPF121717.8E-56183IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0176183IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SMARTSM0035589102132IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.2E-6125158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.38E-8132158No hitNo description
PROSITE profilePS501578.517137165IPR007087Zinc finger, C2H2
SMARTSM0035543137157IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MTVSTATGEA SVSSPGSQIE MIPLSAAPPP QKKKRNLPGM PDPDSLVIAL SPKTLLATNR  60
FVCEICNKGF QRDQNLQLHR RGHNLPWKLK QRNSKEIRKK VYVCPEPTCV HHNPARALGD  120
LTGIKKHFSR KHGEKKYKCE RCSKKYAVQS DWKAHMKTCG TREYKCDCGT IFSRRDSFIT  180
HRAFCDALAE ESARAQTLPV ASREENPNAK TVASPPPPPL TPSTGVVSPG LSIQSSEMPA  240
ENPMGLSPPR SVATTTSAST STTTSVFASV FSSSAISQPS QTPATSSFSN QISALARSDC  300
PSSGCGIEPT SLSLSPSLYL SNNSCSLFSK ADQSHIHYAP SPQPAMSATA LLQKAAQIGA  360
TSSTPSYLRG LGLAVSSSSS GQAGNGKQEN NSASAAGGLG LGLSSGLTDG VMDPSSLFGS  420
KPTTLDLLGL GIGAGGASTS GLSALLTSFG GGFNVGGSSI SYGGGRESSP GGEPWEGAPE  480
RKPNGPALP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18799KLKQRNSKEIRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006473474.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9LVQ71e-140IDD1_ARATH; Protein indeterminate-domain 1
TrEMBLV4T4W20.0V4T4W2_9R
STRINGPOPTR_0002s26430.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-113C2H2-like zinc finger protein